Comments (2)
SamTov
commented on August 17, 2024
1
On the GitHub CI with Python 3.10 we install:
neural-tangents=0.6.2and receive the error:
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/_pytest/assertion/rewrite.py:178: in exec_module
exec(co, module.__dict__)
CI/unit_tests/training_strategies/test_simple_training.py:36: in <module>
from neural_tangents import stax
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/__init__.py:21: in <module>
from . import experimental
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/experimental/__init__.py:15: in <module>
from .empirical_tf.empirical import empirical_ntk_fn_tf
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/experimental/empirical_tf/empirical.py:97: in <module>
from neural_tangents._src.empirical import NtkImplementation, empirical_ntk_fn, DEFAULT_NTK_IMPLEMENTATION, _DEFAULT_NTK_FWD, _DEFAULT_NTK_J_RULES, _DEFAULT_NTK_S_RULES
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/_src/empirical.py:122: in <module>
from .utils import rules
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/_src/utils/rules.py:7: in <module>
from . import utils
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/neural_tangents/_src/utils/utils.py:473: in <module>
x: Union[_ArrayOrShape, jax.ShapedArray],
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/jax/_src/deprecations.py:53: in getattr
raise AttributeError(f"module {module!r} has no attribute {name!r}")
E AttributeError: module 'jax' has no attribute 'ShapedArray'I re-ran this in a fresh conda environment with Python=3.10.13 with neural-tangents=0.6.4 and it seems there is no more problem. It seems like a problem with the older version. I guess our CI has a dependency issue. Thank you for the fast response.
from neural-tangents.
romanngg
commented on August 17, 2024
Thanks for the heads up, I just did a pip install neural-tangents (latest is 0.6.4) and it works on my macbook, could you please paste the error message / give more details? There's only one commit since the release now v0.6.4...main which is to my knowledge is just refactoring...
romann@romann-macbookpro3 ~> pip install neural-tangents --upgrade (base)
Collecting neural-tangents
Downloading neural_tangents-0.6.4-py2.py3-none-any.whl (247 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.8/247.8 kB 11.0 MB/s eta 0:00:00
Collecting tf2jax>=0.3.5
Using cached tf2jax-0.3.5-py3-none-any.whl (91 kB)
Collecting jax>=0.4.14
Using cached jax-0.4.14-py3-none-any.whl
Requirement already satisfied: frozendict>=2.3.8 in ./opt/anaconda3/lib/python3.9/site-packages (from neural-tangents) (2.3.8)
Requirement already satisfied: typing-extensions>=4.7.1 in ./opt/anaconda3/lib/python3.9/site-packages (from neural-tangents) (4.7.1)
Requirement already satisfied: importlib-metadata>=4.6 in ./opt/anaconda3/lib/python3.9/site-packages (from jax>=0.4.14->neural-tangents) (4.11.3)
Requirement already satisfied: ml-dtypes>=0.2.0 in ./opt/anaconda3/lib/python3.9/site-packages (from jax>=0.4.14->neural-tangents) (0.2.0)
Collecting numpy>=1.22
Using cached numpy-1.25.2-cp39-cp39-macosx_11_0_arm64.whl (14.0 MB)
Requirement already satisfied: opt-einsum in ./opt/anaconda3/lib/python3.9/site-packages (from jax>=0.4.14->neural-tangents) (3.3.0)
Requirement already satisfied: scipy>=1.7 in ./opt/anaconda3/lib/python3.9/site-packages (from jax>=0.4.14->neural-tangents) (1.11.1)
Collecting jaxlib>=0.1.37
Using cached jaxlib-0.4.14-cp39-cp39-macosx_11_0_arm64.whl (63.5 MB)
Collecting tensorflow-macos>=2.8.0
Using cached tensorflow_macos-2.13.0-cp39-cp39-macosx_12_0_arm64.whl (189.3 MB)
Requirement already satisfied: dm-tree>=0.1.5 in ./opt/anaconda3/lib/python3.9/site-packages (from tf2jax>=0.3.5->neural-tangents) (0.1.8)
Requirement already satisfied: absl-py in ./opt/anaconda3/lib/python3.9/site-packages (from tf2jax>=0.3.5->neural-tangents) (1.3.0)
Requirement already satisfied: zipp>=0.5 in ./opt/anaconda3/lib/python3.9/site-packages (from importlib-metadata>=4.6->jax>=0.4.14->neural-tangents) (3.8.0)
Using cached tensorflow_macos-2.12.0-cp39-cp39-macosx_12_0_arm64.whl (200.8 MB)
Requirement already satisfied: google-pasta>=0.1.1 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.2.0)
Requirement already satisfied: flatbuffers>=2.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (23.1.4)
Requirement already satisfied: wrapt<1.15,>=1.11.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.14.1)
Requirement already satisfied: six>=1.12.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.16.0)
Requirement already satisfied: grpcio<2.0,>=1.24.3 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.52.0rc1)
Collecting numpy>=1.22
Using cached numpy-1.23.5-cp39-cp39-macosx_11_0_arm64.whl (13.4 MB)
Requirement already satisfied: gast<=0.4.0,>=0.2.1 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.4.0)
Requirement already satisfied: tensorflow-estimator<2.13,>=2.12.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.12.0)
Requirement already satisfied: astunparse>=1.6.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.6.3)
Requirement already satisfied: setuptools in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (63.4.1)
Collecting keras<2.13,>=2.12.0
Using cached keras-2.12.0-py2.py3-none-any.whl (1.7 MB)
Requirement already satisfied: packaging in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (21.3)
Requirement already satisfied: h5py>=2.9.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.7.0)
Requirement already satisfied: tensorboard<2.13,>=2.12 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.12.3)
Requirement already satisfied: libclang>=13.0.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (15.0.6.1)
Requirement already satisfied: protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.20.3)
Requirement already satisfied: termcolor>=1.1.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.2.0)
Requirement already satisfied: wheel<1.0,>=0.23.0 in ./opt/anaconda3/lib/python3.9/site-packages (from astunparse>=1.6.0->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.37.1)
Requirement already satisfied: requests<3,>=2.21.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.28.1)
Requirement already satisfied: google-auth-oauthlib<1.1,>=0.5 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.0.0)
Requirement already satisfied: markdown>=2.6.8 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.3.4)
Requirement already satisfied: werkzeug>=1.0.1 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.0.3)
Requirement already satisfied: google-auth<3,>=1.6.3 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.16.0)
Requirement already satisfied: tensorboard-data-server<0.8.0,>=0.7.0 in ./opt/anaconda3/lib/python3.9/site-packages (from tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.7.1)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in ./opt/anaconda3/lib/python3.9/site-packages (from packaging->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.0.9)
Requirement already satisfied: rsa<5,>=3.1.4 in ./opt/anaconda3/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (4.9)
Requirement already satisfied: pyasn1-modules>=0.2.1 in ./opt/anaconda3/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.2.8)
Requirement already satisfied: cachetools<6.0,>=2.0.0 in ./opt/anaconda3/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (5.2.1)
Requirement already satisfied: requests-oauthlib>=0.7.0 in ./opt/anaconda3/lib/python3.9/site-packages (from google-auth-oauthlib<1.1,>=0.5->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.3.1)
Requirement already satisfied: charset-normalizer<3,>=2 in ./opt/anaconda3/lib/python3.9/site-packages (from requests<3,>=2.21.0->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2.0.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in ./opt/anaconda3/lib/python3.9/site-packages (from requests<3,>=2.21.0->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (1.26.11)
Requirement already satisfied: certifi>=2017.4.17 in ./opt/anaconda3/lib/python3.9/site-packages (from requests<3,>=2.21.0->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (2022.9.24)
Requirement already satisfied: idna<4,>=2.5 in ./opt/anaconda3/lib/python3.9/site-packages (from requests<3,>=2.21.0->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.3)
Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in ./opt/anaconda3/lib/python3.9/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (0.4.8)
Requirement already satisfied: oauthlib>=3.0.0 in ./opt/anaconda3/lib/python3.9/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<1.1,>=0.5->tensorboard<2.13,>=2.12->tensorflow-macos>=2.8.0->tf2jax>=0.3.5->neural-tangents) (3.2.2)
Installing collected packages: numpy, keras, jaxlib, jax, tensorflow-macos, tf2jax, neural-tangents
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
numba 0.55.1 requires numpy<1.22,>=1.18, but you have numpy 1.23.5 which is incompatible.
Successfully installed jax-0.4.14 jaxlib-0.4.14 keras-2.12.0 neural-tangents-0.6.4 numpy-1.23.5 tensorflow-macos-2.12.0 tf2jax-0.3.5
romann@romann-macbookpro3 ~> python (base)
Python 3.9.13 (main, Aug 25 2022, 18:24:45)
[Clang 12.0.0 ] :: Anaconda, Inc. on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import neural_tangents as nt
>>>
>>> nt.__version__
'0.6.4'
from neural-tangents.
Related Issues (20)
- The analytical output of GP can not fit the result of NNGP generated by the nt.predict.gp_inference HOT 1
- Question: Relu Kernel Computation HOT 3
- Question: Connection MLE "parametrized" GP in infinite Width Limit vs minimizing MSE "parametrized" Kernel in infinite Width HOT 4
- Question regarding OOM issues HOT 3
- Question regarding lr in Neural Tangents Cookbook
- eNTK implementation uses deprecated xla attribute HOT 2
- Colab notebooks issue HOT 2
- How to obtain aleatoric uncertainty? HOT 2
- How to compute the empirical after kernel? HOT 1
- Erf function goes beyond [-1,1] HOT 2
- using stax.Cos(a=1.0, b=1.0, c=0.0) to get kernel from conv layer gives error HOT 2
- NTK is not PD
- stax.serial PSDness HOT 1
- How to use batch to gradient_descent_mse_ensemble ? HOT 1
- NTK/NNGP behavior in the infinite regime when weights are drawn from Gaussians with high standard deviation HOT 7
- NKT_mean output Nan, when the number of training sample is increased HOT 3
- Inefficient jacobian computation for embedding layers. HOT 1
- Question regarding the cookbook
- Calling the empirical kernel function with different parameters returns same result
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from neural-tangents.