gpertea Goto Github PK

alman

Android Studio learning app: a simple Alarm Manager app controlling an alarm system through a CGI server

ballgown

code for manipulating ballgown output in R

bamread

basic SAM/BAM/CRAM file reading/writing (and C++ wrapper classes) using HTSlib API

blasr

BLASR: The PacBio® long read aligner

cdbfasta

Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files

chatgpt-your-files

Production-ready MVP for securely chatting with your documents using pgvector

clview

ACE dna sequence cluster viewer

cnview

CNView wrapper

cuffcompare

compare results and evaluate the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie)

cufflinks

docker-jupyter-notebook

:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fqtrim

filtering and trimming next generation sequencing reads

galaxy

Data intensive science for everyone.

gclib

GCLib - Genomic C++ library of reusable code for bioinformatics projects

gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

gfstlib

fast multi-threaded serialization of tabular data (fstlib) adapted for genomics use cases

ggtranscript

Visualising transcript structure and annotation using ggplot2

gnet

Network sockets C++ playground

gptvecdb

example to make and query embeddings from a custom set of documents

gscripts

mish-mash of scripts I have been using in genomics (bioinformatics) or IT/engineering

gsegindex

Testing genomic segment index for fast intersection queries

gsrc

various sources and scripts for genomic research software

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

htslib

C library for high-throughput sequencing data formats

javateach

small projects for teaching Java to kids (and not only)

jquery-heatmap

Simple Heatmap plugin for jquery

judytest

jupyter

jupyter notebook testing/sandbox