Name: Gerry Tonkin-Hill
Type: User
Company: Peter MacCallum Cancer Centre & University of Melbourne
Bio: Research group leader at Peter Mac & Doherty Institute
| previously at UiO & Sanger
| microbial genomics, statistics, machine learning
Location: Australia
Blog: gthlab.au
Gerry Tonkin-Hill's Projects
adegenet: a R package for the multivariate analysis of genetic markers
Framework for building fast genomics web tools with WebAssembly and WebWorkers
:exclamation: This is a read-only mirror of the CRAN R package repository. ape — Analyses of Phylogenetics and Evolution. Homepage: http://ape-package.ird.fr/
A tool for removing redundant genomes from a set of assemblies
Base R/python/etc. internal OpenStack cloud setup for Teichlab
Bayesian Inference Tools in Python
Conda recipes for the bioconda channel.
WebAssembly modules for common genomics utilities
A Framework for Coalescent Simulation in R
Rapid analysis and visualization of coronavirus genome variation
dN/dS methods to quantify selection in cancer and somatic evolution
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
Download FASTQ files from SRA or ENA repositories.
FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter is coded efficiently using Fast-Fourier Transforms to speed up recombination operations.
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
My experimental tools on top of htslib. NOT OFFICIAL!!!
Efficient phylogenomic software by maximum likelihood
de novo virus assembler of Illumina paired reads
Package of the research: Bayesian inference on coalescent-based phylodynamics