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Karolis's Projects

imagej-plugin icon imagej-plugin

This is a Java plugin for the ImageJ image processing program.

pblast-heuristic-algorithm icon pblast-heuristic-algorithm

This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.

pdb-archive-filter icon pdb-archive-filter

This script enables users to filter through PDB archive in order to obtain simple data from each file.

protein-language-models icon protein-language-models

This repository contains python scripts that were used to conduct research, whether protein language model embeddings can be used to train a convolutional neural network for surface amino acid chemical bond recognition. Results and initial data are private.

sql-jdbc-project icon sql-jdbc-project

This project is part of my work in the university to create a connection between Java application and postgreSQL database.

viral-capsids icon viral-capsids

The main purpose of this package is to allow user to calculate the volume of a viral capsid provided the CIF file. Although there a few more programs with different features.

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