gwct Goto Github PK

bioconda-recipes

Conda recipes for the bioconda channel.

bonsai

Algorithm for paring trees based on branch support

congen-bioinformatics

A repo for the ConGen 2022 introductory bioinformatics workshop

core

My personal core functions and scripts for manipulating sequence data, phylogenetic trees, and other things.

fish-genomics

genomeannotation

Best practices and workflow for genome annotation

github-intro

A hands-on introduction to git/github

good-protocols

A space for Good lab members to document their pipelines and protocols.

grampa

Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis

gwct

Genome-Wide Convergence Tester

gwct.github.io

My website

healthy-habits

hyphy-interface

Generates commands and scripts to run HyPhy and parse its output

isofilter-gff

Retrieval of longest isoform from gff file

macaque-cnv-figs

Data and scripts for reproducible figures to accompany our macaque CNV paper.

mp-est

MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function

murinae-docs

murinae-seq

Resources and documents relating to the large-scale rodent sequencing projects.

murine-discordance

Data, scripts, and other resources to accompany murine discordance manuscript

mus-t-haplotype

my-new-repo

Example repo creation

oeb275r-phyloacc-data

owl-monkey

Markdown and code for figures in owl monkey paper

pafr

Read, manipulate and visualize 'Pairwise mApping Format' data in R

phast_scripts

phyloacc

PhyloAcc a software to detect the changes of conservation of a genomic region

poppy

fast fasta popgen

referee

Reference genome quality scores

sample-reads

Randomly sample reads from BAM files based on tags and split them

spider-wgd