unable to upload txt when running from wsl about h2ogpt HOT 3 CLOSED

Traceback as below

Traceback (most recent call last):
File "/home/username/project_name/venv/lib/python3.10/site-packages/gradio/queueing.py", line 501, in call_prediction
output = await route_utils.call_process_api(
File "/home/username/project_name/venv/lib/python3.10/site-packages/gradio/route_utils.py", line 252, in call_process_api
output = await app.get_blocks().process_api(
File "/home/username/project_name/venv/lib/python3.10/site-packages/gradio/blocks.py", line 1664, in process_api
result = await self.call_function(
File "/home/username/project_name/venv/lib/python3.10/site-packages/gradio/blocks.py", line 1205, in call_function
prediction = await anyio.to_thread.run_sync(
File "/home/username/project_name/venv/lib/python3.10/site-packages/anyio/to_thread.py", line 56, in run_sync
return await get_async_backend().run_sync_in_worker_thread(
File "/home/username/project_name/venv/lib/python3.10/site-packages/anyio/_backends/_asyncio.py", line 2144, in run_sync_in_worker_thread
return await future
File "/home/username/project_name/venv/lib/python3.10/site-packages/anyio/_backends/_asyncio.py", line 851, in run
result = context.run(func, *args)
File "/home/username/project_name/venv/lib/python3.10/site-packages/gradio/utils.py", line 702, in wrapper
response = f(*args, **kwargs)
File "/home/username/project_name/h2ogpt/src/gradio_runner.py", line 6702, in get_source_files_given_langchain_mode_gr
return get_source_files_given_langchain_mode(db1s, selection_docs_state1, requests_state1, None,
File "/home/username/project_name/h2ogpt/src/gpt_langchain.py", line 8112, in get_source_files_given_langchain_mode
db = get_any_db(db1s, langchain_mode, langchain_mode_paths, langchain_mode_types,
File "/home/username/project_name/h2ogpt/src/gpt_langchain.py", line 7639, in get_any_db
get_existing_db(db, persist_directory, load_db_if_exists, db_type,
File "/home/username/project_name/h2ogpt/src/gpt_langchain.py", line 4525, in get_existing_db
db.similarity_search('')
File "/home/username/project_name/venv/lib/python3.10/site-packages/langchain_community/vectorstores/chroma.py", line 348, in similarity_search
docs_and_scores = self.similarity_search_with_score(
File "/home/username/project_name/venv/lib/python3.10/site-packages/langchain_community/vectorstores/chroma.py", line 438, in similarity_search_with_score
results = self.__query_collection(
File "/home/username/project_name/venv/lib/python3.10/site-packages/langchain_core/utils/utils.py", line 35, in wrapper
return func(*args, **kwargs)
File "/home/username/project_name/venv/lib/python3.10/site-packages/langchain_community/vectorstores/chroma.py", line 155, in __query_collection
return self._collection.query(
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/api/models/Collection.py", line 345, in query
query_results = self._client._query(
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/telemetry/opentelemetry/init.py", line 127, in wrapper
return f(*args, **kwargs)
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/api/segment.py", line 717, in _query
records = metadata_reader.get_metadata(ids=list(all_ids))
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/telemetry/opentelemetry/init.py", line 127, in wrapper
return f(*args, **kwargs)
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/segment/impl/metadata/sqlite.py", line 214, in get_metadata
return list(self._records(cur, q))
File "/home/username/project_name/venv/lib/python3.10/site-packages/chromadb/segment/impl/metadata/sqlite.py", line 223, in _records
cur.execute(sql, params)
sqlite3.OperationalError: no such column: embedding_metadata.bool_value

from h2ogpt.

Probably related to that. Seems to be a pure chroma db issue with your system.

from h2ogpt.

After deeper analysis appears to be an issue with the default python installation missing FTS5 support, causing the chromadb problem - so need to re-compile Python from source with ./configure --enable-loadable-sqlite-extensions CFLAGS="-DSQLITE_ENABLE_FTS5"

from h2ogpt.