Comments (1)
caused by the pysam version. After I downgraged to pysam version0.9.0, all is fine
from speedseq.
Related Issues (20)
- compilation of freebayes module fails on Ubuntu 18.04 HOT 2
- Error -running speedseq SV - missing pair end parameters:mean stdev
- Parallel link is dead HOT 1
- problems about vcf files.
- Warning: --split_bam (-S) is deprecated
- speedseq var and sv only on genomic regions
- is there a container? HOT 2
- Linker error when doing `make cnvnator`
- -M parameter for BWA MEM alignment
- error: static assertion failed: comparison object must be invocable as const
- Bam file not generated using speedseq align
- mismatched line lengths at line 3 within sequence
- Speedseq is runnning infinitely HOT 1
- [Question] Is ARM64 supported ? HOT 1
- configure: error: cannot guess build type; you must specify one
- error: cannot guess build type; you must specify one
- make :can not find -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore
- Are CRAM files supported by SpeedSeq?
- Compile Errors: *** [Makefile:59: cnvnator] Error 1
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from speedseq.