Comments (3)
Sorry for the inconvenience. I think you were probably trying off of master and that setup.py is totally broken with the changes I've been making. I just merged in some new code to (hopefully) allow this to properly install. Can you pull down the changes and try again?
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Looks good. Thanks.
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Great. Thanks for letting me know.
If you run into any difficulties just open an issue. I've moved things around a lot and haven't quite caught up all the docs yet.
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Related Issues (20)
- Genotyping skips insertions (INS)
- vcftobedpe complains about no END field in LUMPY BNDs. HOT 1
- Python 3.6
- No module named 'l_bp' HOT 1
- svtools vcfpaste error HOT 2
- pip install fails HOT 2
- what is the difference between lmerge sum and prod algorithm ?
- Installation still fails due to conflicting pandas version
- lmerge divide zero error HOT 2
- lsort Index error HOT 3
- Are lmerge same as l_merge.py scripts included in LUMPY?
- possible bug in TRA conversion
- MEI annotations and list index out of range while classifying deletions
- Not able to convert vcf to bedpe (Manta output)
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- bedpetovcf does not work with vcftobedpe output as input HOT 1
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