Comments (3)
ernfrid
commented on June 22, 2024
@jeldred - We have a pre-release to help with installation testing. It's also on PyPi here: https://pypi.python.org/pypi/svtools/0.2.0a1
I tested downloading from the releases page on github, extracting (tar -xzvf), entering the extracted directory and then installing via pip install .. This worked well.
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jeldred
commented on June 22, 2024
#120 addresses this. The Tutorial.md could use improvement but is now updated
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jeldred
commented on June 22, 2024
closing with the release v0.2.0
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Related Issues (20)
- Genotyping skips insertions (INS)
- vcftobedpe complains about no END field in LUMPY BNDs. HOT 1
- Python 3.6
- No module named 'l_bp' HOT 1
- svtools vcfpaste error HOT 2
- pip install fails HOT 2
- what is the difference between lmerge sum and prod algorithm ?
- Installation still fails due to conflicting pandas version
- lmerge divide zero error HOT 2
- lsort Index error HOT 3
- Are lmerge same as l_merge.py scripts included in LUMPY?
- possible bug in TRA conversion
- MEI annotations and list index out of range while classifying deletions
- Not able to convert vcf to bedpe (Manta output)
- svtools copynumber error *** Break *** segmentation violation
- bedpetovcf does not work with vcftobedpe output as input HOT 1
- ValueError: max() arg is an empty sequence
- svtools afreq KeyError: 'SQ' in
- Assistance Needed with svtools lsort - No Output Generated
- svtools lsort KeyError: 'CIPOS'
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