Comments (3)
Based on question in the online survey, trying to make sure we hit the following:
- Clear high-level overview including description of who should be trying to use it (type of user).
- Should have a unique name. Currently there is a logging framework (https://github.com/kayahr/svtools) and an R packaging tool with the same name.
- We need a deployed package where we don't have to build from source. Preferably conda and pip.
- Need our demo and potentially a quick start guide.
- Step by step install guide for both developers and non-developers
- Need to describe how to get help and what help can be provided.
- Troubleshooting guide
- Make sure version, web address, and licences for all third-party dependencies are listed and say whether the dependencies are mandatory or optional.
- Post build tests?
- Funding?
- Announcements or changelog?
from svtools.
#120 addresses some but not all of this...
from svtools.
closing with the release v0.2.0
from svtools.
Related Issues (20)
- Does svtools support to mapping BEDPE to human genes?
- Genotyping skips insertions (INS)
- vcftobedpe complains about no END field in LUMPY BNDs. HOT 1
- Python 3.6
- No module named 'l_bp' HOT 1
- svtools vcfpaste error HOT 2
- pip install fails HOT 2
- what is the difference between lmerge sum and prod algorithm ?
- Installation still fails due to conflicting pandas version
- lmerge divide zero error HOT 2
- lsort Index error HOT 3
- Are lmerge same as l_merge.py scripts included in LUMPY?
- possible bug in TRA conversion
- MEI annotations and list index out of range while classifying deletions
- Not able to convert vcf to bedpe (Manta output)
- svtools copynumber error *** Break *** segmentation violation
- bedpetovcf does not work with vcftobedpe output as input HOT 1
- ValueError: max() arg is an empty sequence
- svtools afreq KeyError: 'SQ' in
- Assistance Needed with svtools lsort - No Output Generated
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from svtools.