hammarn Goto Github PK

1mb335

Repository for developing the new labs for 1MB335

admixtools

Tools test whether admixture occurred and more

dockerfiles

A collection of dockerfiles I've made of software

flowcell_parser

Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

genomics-status

Tornado server for tracking samples at NGI Stockholm

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

maxulysse.github.io

My own jekyll personnal website

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_ngi

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

nextflow_test

Toy repository to replicate bugs

nf_finestructure

A nextflow wrapper for running FineStructure

ngi-nextflowdocs

Common documentation for National Genomics Infrastructure pipelines built with Nextflow

ngi-rnafusion

Old initial repo of the pipeline, main repo here:

ngi-rnaseq

RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

ngi-smrnaseq

ngi_pipeline

Code driving the production pipeline at SciLifeLab

ngi_visualizations

Next-Gen Sequencing Visualisation Scripts.

nougat

oneliners_and_scripts

popolipo

populationsgenomik

Repo for the lab in the courses 1BG508 and 1BG512

publications

Simple web-based publications reference database system.

r_stuff

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

scilifelab_epps

A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

scripts

Miscellaneous scripts, very much WIP and not intended for anyone else to use.

seek

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

taca

Tool for the Automation of Cleanup and Analyses