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2019_scworkshop

Repo for Physalia course Analysis of Single Cell RNA-Seq data

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

adv-r

Advanced R programming: a book

advanced-r-solutions

Set of solutions for the Advanced R programming book

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

attention-is-all-you-need-keras

A Keras+TensorFlow Implementation of the Transformer: Attention Is All You Need

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-deep-learning-4-life-sciences

A collection of resources for Deep Learning in Python for Life Sciences (with focus on biotech and pharma).

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

awesome-shiny-extensions

🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awesome-spatial-omics

backspin

Biclustering algorithm

baldr

bcl2fastq-docker

bda_course_aalto

Bayesian Data Analysis course at Aalto

bento-seq

Bootstrap Estimation Tool for RNA-Seq

best-of-ml-python

🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

bio-rna-splicesites-scoring-maxentscan

Perl module for the scoring of pre-mRNA splice sites by the maxEntScan algorithm of Yeo and Burge

bioawk

BWK awk modified for biological data

bioc2019-isee-workshop

Workshop proposal for Bioc2019: iSEE

biocworkshops2019

bioinfosummer

Tutorial for AMSI BioInfoSummer 2018

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data