pymol .pse for visualization about arpeggio HOT 3 CLOSED

Hi, you can use the show_contacts.py script to generate a PyMOL script from Arpeggio output, which can then be saved to a .pse: Having already run Arpeggio on your PDB file: python show_contacts.py file.pdb -s See python show_contacts.py -h for more options. You can either manually run the .pml script in PyMOL through the GUI, or from the command line in PyMOL's batch mode <https://pymolwiki.org/index.php/Launching_PyMOL#Running_PyMOL_in_batch_mode> (pymol -cq) and then save the .pse with an additional command (for example, using the -d command line flag with PyMOL to add a save command. Please let me know if you have any issues. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#6 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AM6CFSWPfiHoI2DsM3LDaNspfIDq2bSHks5udNvMgaJpZM4Wz0uI> .