Error while running drugZ_w_modules.py about drugz HOT 4 CLOSED

That's due python version.
DrugZ.py is python 2, while drugZ_w_modules.py is python 3.
I will update the FDR calculation in drugZ.py in a bit, and you can keep using drugZ.py then.

from drugz.

Thanks. Problem is solved after I upgrading the pandas to 0.24.

from drugz.

Great! Happy to hear it's solved.

from drugz.

The same error is still existing.

INFO:main:Initiating analysis
INFO:main:Loading the read count matrix
INFO:main:Normalizing read counts
INFO:main:Calculating raw fold change for replicate 1
INFO:main:Caculating smoothed Epirical Bayes estimates of stdev for replicate 1
INFO:main:Caculating guide-level Zscores for replicate 1
Traceback (most recent call last):
File "drugz.py", line 478, in
main()
File "drugz.py", line 475, in main
drugZ_analysis(args)
File "drugz.py", line 458, in drugZ_analysis
fold_change =pd.concat(fold_changes, axis=1, sort=False)
TypeError: concat() got an unexpected keyword argument 'sort'

from drugz.