hartleys Goto Github PK

dnanexustutorial

A very basic tutorial on the use of the DnaNexus cloud computing tools.

easybuild-framework

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

genelist_to_bed

Convert a list of genes to a bedfile

headlessigv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

igvsnap

Script to automatically create and run IGV snapshot batchscripts

junctionseq

The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.

junctionseqtesting

A test repository

qorts

Quality of RNA-Seq Toolset

rebc_scna_utils

R scripts for merging SCNA event calls into discrete SCNA events. Used for the REBC analysis.

scraptesting

swhmiscutilsalpha

A collection of scripts generally intended for private use. Feel free to use them as inspiration, but they are generally customized for my own use and may not work as-is. WARNING WARNING WARNING: NOT FOR PRODUCTION USE.

testscrapswh

varmyknife

Collection of assorted tools for processing, filtering, annotating, organizing, merging, comparing, and reformatting variant data.

varmyknifeexampledata

Example data for use with the vArmyKnife manual

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities