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ismb2019-demo

memetopwm

Parse STREME/MEME output file into separate PWM files in Taipale lab format

my-first-repo

nsweep

Create Nsweep-motifs from a neural network model using Deeplift importance scores

peakxus

PeakXus is ChIP-exo/Nexus peak caller. See Wiki for usage instructions and examples.

peakxus-legacy

PeakXus is ChIP-exo/Nexus peak caller. See Wiki for usage instructions and examples.

plotmi

Visualize interactions learned by a machine learning model by plotting mutual information between pairwise k-mer distributions

promoteranalysis

Scripts for scoring and visualizing promoter sequences with a pre-trained neural network model

randomreads

Embedding TF motifs to given or random DNA sequence background

recipe

Coderefinery excercises repo

repwm

Validating PWMs with data using the multinomial approach

seq2heatmap

Plot DNA sequence as a heatmap