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bammetrics

A BioWDL workflow for gathering metrics from a BAM file. Category:Single-Sample

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

cli

the package manager for JavaScript

dockstore-edge-covid19

expression-quantification

A BioWDL workflow for quantifying expression. Category:Multi-Sample

footprint

利用echarts展示旅行足迹

gatk

Official code repository for GATK versions 4 and up

gatk-preprocess

A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. Category:Single-Sample

gatk-variantcalling

A pipeline that calls variants on a group of BAM files. Category:Multi-Sample

gitskills

learngit

learngit-1

推送请注意：请使用UTF-8编码，只接受能被自动Merge的Pull Request

netseq

qc

A BioWDL workflow for gathering QC metrics on and prepocessing FASTQ files. Category:Single-Sample

qc-analysis-pipeline

Workflow used for WGS/WES data QC

rna-seq

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

scripts

Scripts for releasing, updating docs etc. in biowdl repos

sequence-classification

A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample

tasks

A collection of reusable WDL tasks. Category:Other

the-latex-thesis-template-of-ucas

**科学院大学学位论文LaTeX模板

ucasthesis

a LaTeX template for UCAS (Currently support ICT and IIE, please find IIE version in branches.)

vcf2maf-tools

Suite of tools from https://github.com/mskcc/vcf2maf/

viral-pipelines

viral-ngs: complete pipelines

wechat_jump_game

python 微信《跳一跳》辅助