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aa_stat

AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.

alphafold

Open source code for AlphaFold.

applepicker-python

atomium

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

cimage-simple

consensus_struct_align

Create a Consensus of Structural Alignments

coot-trimmings

Python customizations for the macromolecular model building software Coot.

cryodrgn

Neural networks for cryo-EM reconstruction

cryoem_dockerfiles

data_pulling_test2

datadog-gpustat

Agent Check to get metrics from NVIDIA Management Library (NVML)

decoypyrat

DecoyPYrat - Fast Hybrid Decoy Sequence Database Creation for Proteomic Mass Spectrometery Analyses

deepbayes-2019

Practical assignments of the Deep|Bayes summer school 2019

fasta_utilities

Utilities for downloading and managing protein FASTA files.

fatcat-dist

fragment-isotope-distribution-paper

Source code associated with the paper 'Approximating isotopic distributions of biomolecule fragments'

gource

software version control visualization

gpu-stats-reporter

NodeJS service that reports GPU stats

h5xplorer

A customizable HDF5 browser with iPython console embbeded

jsblot

A Western Blot-like Dataset Visualization Tool

kaikonnect

Interconnect between Kaiko and TagGraph

komidabot

A Slack chat bot to request the daily menu at the komida restaurants of the University of Antwerp.

learn_cryoem_math

mascotparser

A parser for Mascot search results ( both PMF and MSMS) in R package.

maxquant_linux_guide

A guide to running MaxQuant in Linux

milkyway_frontend

motion-correction

Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories

nvtop

NVIDIA GPUs htop like monitoring tool

optimal_representation

optrep