hekstra-lab Goto Github PK

am50-student-2019

Course materials for Applied Math 50 offered Spring 2019.

cartographer

Approximate bayesian inference of fourier difference map coefficients

ccbxray

Notes and Tools for Analyzing MX Datasets from the CCB X-Ray Facility

cog

Wrapper for Precognition to simplify Laue data reduction

df-crystal

Pandas dataframes extended for crystallography computing operations.

disco

Generate feasible Laue Bragg spots from randomly oriented crystals

dw

jupyter notebooks exploring the double-Wilson model

dw-examples

Examples of merging crystallographic intensities with a bivariate prior

east

Scripts for Finding Crystal Orientation

ef-x-crystal-md

Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.

envs

conda environment repository

fasrc-ood-jupyter

OnDemand app for serving Jupyter notebooks out of your local path

fast-overlap

meep meep

hadamuxer

Demultiplex Hadamard-encoded diffraction images.

hekstra-lab.github.io

Essentially a custom 404 in case anyone tries this URL

landfill

Machine learning tools to estimate spatiotemporally resolved background intentensities

laser-pointer

Aiming lasers for microscopy

laue-index-assigner

A robust algorithm for assigning miller indices to Laue data from approximate indexing solutions.

marccd

Read, write, and manipulate diffraction images that use the MarCCD format

mdtools

Tools for running MD simulations in OpenMM

microutil

Python utils for working microscopy datasets

napari-labeller

nesm-python

Notebooks for the python workshop at the New England Society for Microscopy Spring 2021 Meeting

north

Figure out which way's up from x-ray test shots.

np-bragg

A very simplistic x-ray diffraction simulator for teaching purposes.

phase-retrieval

A small library implementing phase retrieval algorithms for 2D images.

raman-analysis

Spontaneous Raman analysis library

regroup

Determine new space groups for analyzing pump-probe crystallography experiments

room-of-requirement

Useful Lab Utilities

russell-thesis

Jupyter notebooks that were used for data analysis and figure making for John Russell's Ph.D. Thesis.