hippylib Goto Github PK

              Inverse Problem PYthon library

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              https://hippylib.github.io

hIPPYlib implements state-of-the-art scalable algorithms for deterministic and Bayesian inverse problems governed by partial differential equations (PDEs). It builds on FEniCS (a parallel finite element element library) for the discretization of the PDE and on PETSc for scalable and efficient linear algebra operations and solvers.

For building instructions, see the file INSTALL.md. Copyright information and licensing restrictions can be found in the file COPYRIGHT.

The best starting point for new users interested in hIPPYlib's features are the interactive tutorials in the tutorial folder.

Conceptually, hIPPYlib can be viewed as a toolbox that provides the building blocks for experimenting new ideas and developing scalable algorithms for PDE-constrained deterministic and Bayesian inverse problems.

In hIPPYlib the user can express the forward PDE and the likelihood in weak form using the friendly, compact, near-mathematical notation of FEniCS, which will then automatically generate efficient code for the discretization. Linear and nonlinear, and stationary and time-dependent PDEs are supported in hIPPYlib. For stationary problems, gradient and Hessian information can be automatically generated by hIPPYlib using FEniCS symbolic differentiation of the relevant weak forms. For time-dependent problems, instead, symbolic differentiation can only be used for the spatial terms, and the contribution to gradients and Hessians arising from the time dynamics needs to be provided by the user.

Noise and prior covariance operators are modeled as inverses of elliptic differential operators allowing us to build on existing fast multigrid solvers for elliptic operators without explicitly constructing the dense covariance operator.

The key property of the algorithms underlying hIPPYlib is that solution of the deterministic and Bayesian inverse problem is computed at a cost, measured in forward PDE solves, that is independent of the parameter dimension.

hIPPYlib provides a robust implementation of the inexact Newton-conjugate gradient algorithm to compute the maximum a posterior (MAP) point. The gradient and Hessian actions are computed via their weak form specification in FEniCS by constraining the state and adjoint variables to satisfy the forward and adjoint problem. The Newton system is solved inexactly by early termination of CG iterations via Eisenstat-Walker (to prevent oversolving) and Steihaug (to avoid negative curvature) criteria. Two globalization techniques are available to the user: Armijo back-tracking line search and trust region.

In hIPPYlib, the posterior covariance is approximated by the inverse of the Hessian of the negative log posterior evaluated at the MAP point. This Gaussian approximation is exact when the parameter-to-observable map is linear; otherwise, its logarithm agrees to two derivatives with the log posterior at the MAP point, and thus it can serve as a proposal for Hessian-based Markov chain Monte Carlo (MCMC) methods. hIPPYlib makes the construction of the posterior covariance tractable by invoking a low-rank approximation of the Hessian of the log likelihood.

hIPPYlib also offers scalable methods for sample generation. To sample large scale spatially correlated Gaussian random fields from the prior distribution, hIPPYlib implements a new method that strongly relies on the structure of the covariance operator defined as the inverse of a differential operator: by exploiting the assembly procedure of finite element matrices hIPPYlib constructs a sparse Cholesky-like rectangular decomposition of the precision operator. To sample from a local Gaussian approximation to the posterior (such as at the MAP point) hIPPYlib exploits the low rank factorization of the Hessian of the log likelihood to correct samples from the prior distribution. Finally, to explore the posterior distribution, hIPPYlib implements dimension independent MCMC sampling methods enchanted by Hessian information.

Finally, randomized and probing algorithms are available to compute the pointwise variance of the prior/posterior distribution and the trace of the covariance operator.