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analysisscripts

cutesv

Long read based human genomic structural variation detection with cuteSV

debga

de Bruijn Graph-based read aligner

debga-vara

Fast variation-aware read aligner

debwt

A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.

degsm

de Bruijn Graph Constructor in Scalable Memory

desalt

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

desamba

deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

despi

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

hitbc.github.io

lamsa

Long Approximate Matches-based Split Aligner

pansvr

An NGS SV caller based on pan-genome

rcanid

read Clustering and Assembliy-based Novel insertion Detection tool

rhat

Alignment tool for noisy long reads

rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

rmfilter

Acceleration of long read-based structure variation calling by chimeric read filtering

tidehunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

ubwt

ubwt: Uni-path BWT utilities

xqtlimp

xQTLImp: efficient and accurate xQTL summary statistics imputation