hobnobmancer Goto Github PK
Name: Emma Hobbs
Type: User
Company: EMBL-EBI
Bio: InterPro and InterProScan Bioinformatics developer at EMBL-EBI
Location: Cambridge, UK
Name: Emma Hobbs
Type: User
Company: EMBL-EBI
Bio: InterPro and InterProScan Bioinformatics developer at EMBL-EBI
Location: Cambridge, UK
Conda recipes for the bioconda channel.
Repo containing data and teaching materials for carpentries workshops
`cazomevolve` ('cazome-evolve') investigates the evolution of CAZomes, and identifies CAZy families that co-occur within the genomes of candidate species, more frequently than would be expected by lineage.
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
Simultaneous Classification and Motif Identification(eCAMI)
A robot powered training repository :robot:
Repo for storing code and notebooks for competing in kaggle machine-learning and data science competitions.
Code and notes for learning and practising using C#.
Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
Python module for average nucleotide identity analyses
Python package for the identification of comprehensive CAZyomes of candidate species
Store of Python files containing solutions to problems from Rosalind
Repository of utility and miscellaneous functions for using in bioinformatics pipelines, primarily in Python
Programs used in the lab for various tasks
Explore the sequence, structure and function of CAZymes containing a CE and PL9 domain.
Bioinformatics work for the paper Foltanyi et al., 2022
Supplementary Information for the independent benchmarking of CAZyme classifiers dbCAN, eCAMI and Hotpep
Supplementary information for analyses reported in Hobbs et al. (2023), for presenting the software package `cazy_webscraper`
Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae
Supplementary information for analyses reported in Hobbs et al. (2024), describing the evolution of the CAZome
Supplementary information for the annotation of 634 fungal and oomycete CAZomes using pyrewton
Supplementary information for Holmes et al. (2020)
Materials for the SIPBS CompBio workshop
Starting template for UG/PG bioinformatics projects using git
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.