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arginine-methylation-prediction-with-ctd-features

There are available data in arginine methylation prediction problem

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

docker-flask-image-recognition-sklearn

Dockerfile utilizing flask to host a scikit-learn image recognition model

expression-prediction-from-dna-sequence

gaussian_mixture_models

This is the code for "Gaussian Mixture Models - The Math of Intelligence (Week 7)" By Siraj Raval on Youtube

gr

Genome Research template for LaTeX

hilearn

A small library of machine learning methods and data visualization plots

hlab-pubmon

Publication monitoring at Huang Lab

hou_basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

ifeature

iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide sequences. iFeature is capable of calculating and extracting a wide spectrum of 18 major sequence encoding schemes that encompass 53 different types of feature descriptors. Furthermore, iFeature also integrates five kinds of frequently used feature clustering algorithms, four feature selection algorithms and three dimensionality reduction algorithms.

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

machine-learning-models

Decision Trees, Random Forest, Dynamic Time Warping, Naive Bayes, KNN, Linear Regression, Logistic Regression, Mixture Of Gaussian, Neural Network, PCA, SVD, Gaussian Naive Bayes, Fitting Data to Gaussian, K-Means

msscrnaseq2019

Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al

murk

predicting-abc-transporters

This repository includes raw data in "Predicting ATP-binding cassette transporters using the random forest method"

prosplign-intron-scorer

ProSplign intron scorer parses introns from ProSplign's alignment output and scores them based on local alignment quality.

pyseqlib

A small python library to process sequencing data.

pytorch

getmatrix

samap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

sbms-server

School of Biomedical Sciences (HKU) server wiki repository

scats

A statistical tool to detect differential alternative splicing events using single-cell RNA-seq

scmatch

scMatch: a single-cell gene expression profile annotation tool using reference datasets

scvelo

RNA Velocity generalized through dynamical modeling

scxpresso

Predicting cell population-specific gene expression levels

singlecelltk

Interactively Analyze scRNA-Seq Data

splicingrates

trackplot

Generate IGV style locus tracks from bigWig files in R

vireo

Demultiplexing pooled scRNA-seq data without genotype reference

youtubetutorials