Comments (2)
hsokooti
commented on September 13, 2024
Dear markemus,
I updated the documentation. About the extension, you can define it for your own database in the setting_utils.py. For example, in line 88, this is defined for the DIR-Lab_4D:
elif selected_data == 'DIR-Lab_4D':
data_setting['Dim'] = '3D'
data_setting['ext'] = '.mha'
data_setting['imageByte'] = 2 # equals to sitk.sitkInt16 , we prefer not to import sitk in SettingUtils
data_setting['types'] = ['T00', 'T10', 'T20', 'T30', 'T40', 'T50', 'T60', 'T70', 'T80', 'T90'] # for eg: 'Fixed' or 'Moving' : actually Fixed indicates baseline and Moving indicates followup
data_setting['expPrefix'] = 'case' # for eg: case1
data_setting['defaultPixelValue'] = -2048 # The pixel value when a transformed pixel is outside of the image
data_setting['voxelSize'] = [1, 1, 1]
data_setting['AffineRegistration'] = True
data_setting['UnsureLandmarkAvailable'] = False
data_setting['CNList'] = [i for i in range(1, 11)]To check all addresses, I suggest running and testing the following line:
original_image_address = su.address_generator(setting, 'originalIm', data='DIR-Lab_4D', cn=1, type_im=0, stage=1)I hope that this can help.
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markemus
commented on September 13, 2024
Very helpful, thank you!
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