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3ca

Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".

ancestree

artsy

An R package for making generative art using 'ggplot2'.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

blog

Build a Jekyll blog in minutes, without touching the command line.

blog_code

Code used on the mcfromnz.wordpress blog

cb_sniffer

mutation(barcode) caller for 10x single cell data

ccr2019_code

R scripts used in CCR paper Kawakami et al. 2019.

cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

celltalker

Inference of cell-cell communication from single-cell RNAseq data

celltypist

A tool for semi-automatic cell type annotation

cerebra

A tool for fast and accurate summarizing of variant calling format (VCF) files

cerebroapp

R package containing the Cerebro application.

chatgptweb_luohc

chimaera

Implementation of the Chimaera algorithm

circrna_benchmarking

citup

Clonality inference in multiple tumor samples using phylogeny

clabomic

for clinical lab data analysis

clonarch

Examining the Spatial Clonal Architecture of Tumors

clonefinderapi

API for the Clone Finder application

clonemap

An R package to plot maps of clone distributions in somatic evolution

cm-drug

cola

A General Framework for Consensus Partitioning

cola_manuscript

Scripts for the cola manuscript

copykat

csomapr

R package of CSOmap(developing

cutofffinder

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js