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b_affy

[depreciated] Bayesian-network analysis of microarry data

bai-indexer

Build an index for your BAM Index (BAI)

canopy

Python package canopy loads the SomaLogic, Inc. proprietary data file called an *.adat. The package provides auxiliary functions for extracting relevant information from the ADAT object once in the Python environment. Basic familiarity with the Python environment is assumed, as is the ability to install contributed packages from the Python Package Installer (pip)

capy

Cancer Analysis tools in Python

cs109

cs181-lectures

cs181-s17-homeworks

detin

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

efficientr

Efficient R programming: a book

faply

faster plyr::aaply function

getzlab-lnp

Log-normal-Poisson regression model from Hess et al. 2019

getzlab-signatureanalyzer

Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

hurrialice.github.io

A minimalist Jekyll theme for running a personal blog

igv_remote

A Python interface for interacting with IGV desktop over a port using IGV batch commands

kinship2

Pedigree creation, plotting, and analytics

lendingclub

Machine learning practices: Should a loan be accepted? Check this:

metnet

bicolored network for mRNA and m6A sites

poibin

Poisson Binomial Probability Distribution for Python

qutils

gist indices to bioinformatics-related scripts

scanvis

SCANVIS - a toolkit for SCoring, ANnotating and VISualizing splice junctions

singlecellopenproblems

Formalizing and benchmarking open problems in single-cell genomics

uncertainties

AM207 project: dissect aleatoric and epistemic uncertainty

what

Pytorch implementation of "What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision?"