husensofteng Goto Github PK
Name: Husen M. Umer
Type: User
Bio: PhD in Cancer Research; Bioinformatics Data Analyst; Software Engineer; Programming novel tools and workflows for NGS & Multi-Omics data
Husen M. Umer's Projects
csama2016
CSAMA course test
funmotifs
A framework for annotating transcription factor motifs
funmotifsshinyapp
Shiny app code for the funMotifs database web interface
gffutils
GFF and GTF file manipulation and interconversion
husensofteng
lehtiolab.github.io
Lehtiolab website
longqc
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
msstitch
MS proteomics post-processing utilities
nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
pancancer_analysis
Scripts used to analyse the PCAWG datasets
pb-human-wgs-workflow-snakemake
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
pfms
Peak-finder meta server for ChIP-seq data analaysis
pfms_p
Peak-finder meta server for ChIP-seq data analaysis
pgatk
PGATK: ProteoGenomics Analysis ToolKit
pgdb
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
pgdb-manuscript
proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
proteogenomics_python
python scripts for proteogenomics analysis
proteoworks
Workshops for Proteomics Data Analysis Tasks by Bioinformaticians at Lehtio Lab
quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
regdriver
regDriver detect functional somatic mutaionts
sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
scripts
Scripts for handy tasks
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data
tfnet
tfNet is a computational tool that identifies putative regulatory regions and genomic signal interactions in a genome-wide scale.
tpic2017
TPIC: A social media dataset for temporal popularity prediction
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.