hushuangwei Goto Github PK

2023_rl_capsid_design

aav-screening

Code used in the screening for efficient AAV serotypes

ace

Fast and flexible code for solving the inverse Ising/Potts inference problem

admm

ADMM algorithm implementation

alignment-with-openfst

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

attention_is_all_you_need

[WIP] Attention Is All You Need (Vaswani et al. 2017) by Chainer.

bacteria_ribosome_dataset

colabfold

Making Protein folding accessible to all via Google Colab!

completablefuture

CompletableFuture in Java 8 - asynchronous processing done right

conceptnet-numberbatch

config

configuration library for JVM languages using HOCON files

cs446

:computer: CS446: Machine Learning in Spring 2018, UIUC

deepce

A deep learning framework for high-throughput mechanism-driven phenotype screening

deepfolding

Leverage deep learning techniques to predict protein structure (on-going)

deepgraphgo

DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

design-pattern-reloaded

Implementation of GoF design patterns in Java 8

droidsafe-src

DroidSafe Android Static Analysis Source Repository

effectivetensorflow

TensorFlow tutorials and best practices.

flash-attention

Fast and memory-efficient exact attention

hushuangwei.github.com

interview-notebook

:books: 技术面试需要掌握的基础知识整理，欢迎编辑~

invariant-point-attention

Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module

java8keleo

Several scripts and utils about Java8.

kleene-lang

a high-level language, based on OpenFst, for finite-state programming

learnrnn

librime

Rime Input Method Engine, the core library

linearfold

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

locarna

Alignment of RNAs