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10-fold_cross_validation

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

auspice

Web app for visualizing pathogen evolution

bc-covid-epi-rt

A method to estimate Effective Reproductive Number (Rt) using the province of BC's case report data.

card

card-analysis

chatpaper

Use ChatGPT to summarize the arXiv papers.

chiral_protein_design

codon2nucleotide

codonpair

A codon pair score/codon pair bias calculator

codonw-slim

A slimmed down fork of CodonW with python bindings

cosa

Coronavirus (SARS-Cov-2) sequencing analysis

covtracker

cpbias

cpm

Easy-to-use CPM for Chinese text generation（基于CPM的中文文本生成）

disco-diffusion-wrapper

Implementation of disco-diffusion wrapper that could run on your own GPU with batch text input.

earlyr

Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.

epiestim

A tool to estimate time varying instantaneous reproduction number during epidemics

epiestimapp

Source code for the EpiEstim app.

epyestim

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

evolocity

Evolutionary velocity with protein language models

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

genslm

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

libfewshot

LibFewShot: A Comprehensive Library for Few-shot Learning.

mixomics

Development repository for the Bioconductor package 'mixOmics '

paper-code

Code for the manuscript "Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2"

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

pepline-for-virus-analysis

pipe-line-for-using-api-from-outbreak.info

porecov

SARS-CoV-2 workflow for nanopore sequence data