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10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

activepathways

Integrative pathway enrichment analysis of multivariate omics data

addinslist

📜 Discover and install useful RStudio addins

advanced_programming

advanced programming

alacritty

A cross-platform, GPU-accelerated terminal emulator

analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.

asc_seurat

awesome-python

A curated list of awesome Python frameworks, libraries and software.

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

azimuth

A Shiny web app for mapping datasets using Seurat v4

bam-readcount

count DNA sequence reads in BAM files

bamdeal

BamDeal: a comprehensive toolkit for bam manipulation

bget

Portable command-line tool to query bioinformatics APIs, data, databases and files.

bisque

An R toolkit for estimation of cell composition from bulk expression data

bob

Bob 是一款 Mac 端翻译软件，支持划词翻译、截图翻译以及手动输入翻译。

boxplotr.shiny

shiny application to generate box plots with R

broom

Convert statistical analysis objects from R into tidy format

ccinx

Build predicted cell-cell interaction networks from single-cell data.

cell2location

cell2location: High-throughput spatial mapping of cell types

cellchat

R toolkit for inference and analysis of cell-cell communication from single-cell data

cellseek

Interactive exploration of single cell data

cellxgene

An interactive explorer for single-cell transcriptomics data

confuns

Convenience R functions

conics

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

createkeggdb

Create KEGG.db Package

deepcell-tf

Deep Learning Library for Single Cell Analysis

doubletdetection

Doublet detection in single-cell RNA-seq data.

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕