Comments (1)
Dear MingwuDuan,
it appears that by running devtools::install_github("iaconogi/bigSCale2") none of the dependencies is automatically installed, which causes the error.
One solution which is slow but will work for sure is to install the dependencies manually (the 21 packages listed in the error).
So:
install.packages('Rcpp')
install.packages('Rfast')
ans so on.
Please note that some packages are from Bioconductor, so you'll need to install them like this:
BiocManager::install("SingleCellExperiment")
BiocManager::install("org.Hs.eg.db")
BiocManager::install("org.Mm.eg.db")
Do not hesistate to contact me for further help.
Best
Giovanni
from bigscale2.
Related Issues (20)
- Visualization of the regulatory network HOT 1
- libv8 library dependency installation difficulty HOT 2
- Error in iCells.simple: object 'intermediate' not found HOT 3
- Critical value way too high (1.02513e+10): Stopping the analysis while performing compute.distance under compute.network HOT 1
- Using a singleCellExperiment type object converted from a Seurat type causes bigscale() to error out. HOT 3
- Network using non-Ensembl/-symbol gene names HOT 3
- Correlation matrix and the list of genes with centrality from bigSCale2 HOT 1
- running function bigscale: Error in vector("list", tot.clusters * tot.clusters) : vector size cannot be infinite HOT 12
- construct Gene Regulatory Networks for other species SC data HOT 2
- Error at clustering stage HOT 3
- Could bigscale2 export gene clusters or gene modules after analyzing GRN? HOT 2
- Bigscale Repo removed HOT 1
- Error: vector memory exhausted (limit reached?) HOT 1
- How can I get the cell information after iCells() downsample process? HOT 3
- Data normalization HOT 1
- Using raw UMI counts in bigscale
- Can I apply infercnv on iCells?
- Error in Rfast::rowVars HOT 2
- rowSort' is not an exported object from 'namespace:Rfast HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bigscale2.