iansetliff Goto Github PK
Name: Ian Setliff
Type: User
Company: Vanderbilt Vaccine Center
Location: Nashville, TN
Name: Ian Setliff
Type: User
Company: Vanderbilt Vaccine Center
Location: Nashville, TN
MiAIRR: AIRR Community Minimal Standards WG
This project contains scripts,source codes, documents, etc. associated with the AMPssembler Project.
Small script that allows to count TAGS from a CITE-seq experiment
Going from csv (or .txt, etc) to fasta format
Model of germinal center B-cell affinity maturation.
Grouping of Lymphocyte Interactions by Paratope Hotspots
BCR repertoire analysis from Greiff 2014 data
site
IgSimulator is a versatile tool for simulation of immunoglobulin repertoire
A phylogenetic analysis program designed for B cell receptor sequence data. It implements the HLP17 codon substitution model which is capable of accounting for unusual features of affinity maturation such as context dependent hotspot mutations, nonreversible sequence evolution, and descent from a known germline sequence. Based off of codonPhyML.
AbNet: an Antibody Repertoire Network Construction Toolkit
Software associated with the manuscript: "Statistical Inference of a Convergent Antibody Repertoire Response to Influenza Vaccine."
Identify and quantify peptides from mass spectrometry raw data
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Organ on Chip PK/PD Modeling
A Python 2 porting of the parametric t-SNE algorithm
B-cell receptor sequence annotation, simulation, and clonal family inference
All dependencies/setup for Vanderbilt's ACCRE cluster
All dependencies, etc for Vanderbilt's ACCRE cluster
Example Python Scripts
Useful R scripts for BCR/TCR Repertoire Analysis
Quantitative research and educational materials
SLURM Example Scripts
A collection of bioinformatics tools for sequence analysis, with an emphasis on Next-Generation Sequencing and Rep-Seq.
python package for working with immune receptor sequence data
A toolkit for repertoire analysis of antibodies and T cell receptors
Post-analysis of immune repertoire sequencing data
Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.