icgc-argo Goto Github PK

.github

ICGC ARGO Contributing Guidelines and Licencing information

argo-clinical

Clinical data submission for ARGO programs.

argo-data-submission

Workflow to submit genomic data to ARGO RDPC for processing

argo-dictionary

Development of the ARGO Data Dictionary

argo-docs

User documentation site for the ICGC-ARGO Data Platform

argo-meta

This repo is used to record metadata for testing workflows

argo-metadata-schemas

Repo to host ARGO metadata schemas defined using JSON Schema

audit-tools

Contains various tools used for auditing

benchmark-data-submission

Workflow to submit benchmark and test datasets to RDPC Dev/QA env.

charts

Helm charts for argo

dac-api

Development of the Data Access Control API

dac-roadmap

Roadmap items that do not fall into the UI or API for the new DACO Website.

dac-ui

Development of the ICGC ARGO Data Access Control UI

daco2ego

Utility and service to load DACO list into Ego.

data-centers-registry

Discovery and registery service for RDPCs (regional data processing center) and RDDCs (regional data distribution center)

data-processing-utility-tools

Collection of utility tools for ARGO data processing

data-qa-wfs

This repository maintains a collection of dockerized data quality assurance / benchmarking workflows.

data-qc-tools-and-wfs

A collection of data QC tools / modules used in various ICGC ARGO workflows

dckr_ega_decrypt

dckr_ega_download

dckr_icgc_download

dckr_prepare_metadata_xml

dckr_song_upload

demo-wfpkgs

Demo Nextflow Workflow Packages

dna-seq-processing-tools

A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow

dna-seq-processing-wfs

ICGC ARGO DNA-Seq Processing Workflow

donor-submission-aggregator

Event-driven donor aggregation service for the ICGC-ARGO Submission System

e2e-test

End to end testing of The ICGC ARGO platform

ega-file-transfer

ega-file-transfer-to-collab-jt