Comments (6)
The output does not seem to have the issue when I tested on Unbunt 16.04
output.zip
raven@raven-VirtualBox:~/raven$ ./run_tests --library-report
PYTHONPATH=/home/raven/raven/framework/contrib:
PATH=/home/raven/bin:/home/raven/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
Python Executable: /usr/bin/python
Possible Python Executables on System:
/usr/bin/python3.5
/usr/bin/python
/usr/bin/python3
/usr/bin/python2.7
/usr/bin/python2
OS: Linux-4.8.0-36-generic-x86_64-with-Ubuntu-16.04-xenial
Python: 2.7.12 (default, Nov 19 2016, 06:48:10)
[GCC 5.4.0 20160609]
Git information:
34a1b4f343a13b91bc9f05df927bdff934e205f8 Sat, 25 Mar 2017 16:29:15 -0600
fatal: No names found, cannot describe anything.
5896f1fc7c5942d5202c78ff6b3d39208d65bbbf moose (C++03_final-2728-g5896f1f)
Libraries report:
numpy 1.11.0
<module 'numpy' from '/usr/lib/python2.7/dist-packages/numpy/__init__.pyc'>
h5py 2.6.0
<module 'h5py' from '/usr/lib/python2.7/dist-packages/h5py/__init__.pyc'>
scipy 0.17.0
<module 'scipy' from '/usr/lib/python2.7/dist-packages/scipy/__init__.pyc'>
scipy has version 0.17.0 but tested version is 0.17.1
sklearn 0.17
<module 'sklearn' from '/usr/lib/python2.7/dist-packages/sklearn/__init__.pyc'>
sklearn has version 0.17 but tested version is 0.17.1
matplotlib 1.5.1
<module 'matplotlib' from '/usr/lib/python2.7/dist-packages/matplotlib/__init__.pyc'>
AMSC
<module 'AMSC' from '/home/raven/raven/framework/contrib/AMSC/__init__.py'>
distribution1D
<module 'crow_modules.distribution1Dpy2' from '/home/raven/raven/crow/install/crow_modules/distribution1Dpy2.pyc'>
interpolationND
<module 'crow_modules.interpolationNDpy2' from '/home/raven/raven/crow/install/crow_modules/interpolationNDpy2.pyc'>
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I noticed this in the original library report that caused this issue:
numpy 1.11.1
<module 'numpy' from '/usr/local/lib/python2.7/dist-packages/numpy/__init__.pyc'>
numpy has version 1.11.1 but tested version is 1.11.0
So it is possible that this was caused by a problem with compiling numpy 1.11.1
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This problem was fixed by the user updating numpy. Closing since it was not a raven bug.
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There should be a test that checks the sensitivities calculated by basic statistics.
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Josh there are.
For example,
tests/framework/PostProcessors/BasicStatistics/sensitivity.xml
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I checked with the following modification:
diff --git a/framework/PostProcessors.py b/framework/PostProcessors.py
index 5314f16..0b890f6 100644
--- a/framework/PostProcessors.py
+++ b/framework/PostProcessors.py
@@ -2561,7 +2561,7 @@ class BasicStatistics(BasePostProcessor):
#use regressor coefficients as sensitivity
regressDict = dict(zip(useFeatures, LinearRegression().fit(inpSamples,targetVals).coef_))
for f,feature in enumerate(features):
- calculations[metric][target][feature] = 1.0 if feature==target else regressDict[feature]
+ calculations[metric][target][feature] = 11.0 if feature==target else regressDict[feature]
#
# covariance matrix
#
The sensitivity tests fail as expected with this modification. I am closing this because it has been verified that the sensitivities are checked.
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