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Name: Shuoguo
Type: User
Shuoguo's Projects
barcbam
Barbam to work with barcoded sequencing data
bwamapping
bwa mapping and bwa hybrid mapping
flu_seq
Some script for handle flu senquences and trees
gatk_varcall
GATK best practice variant calling pipeline
gemcode
gemcode tech related scripts
grch38_gatk_bundle
liftover version of the gatk resource bundle for the new assembling GRCH38 (primary assembling, no alt contigs or decoy sequences).
ndarpy
Scrtips to handle NDAR data sets
pysplit
similar to UNIX split command except:
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
rnaseq_tutorial_wiki
The wiki repo, with pull request enabled, for the rnaseq_tutorial
sjm
Simple Job Manager
ucsc_track_hub
initial commit
unmap2fq
Short pipeline that abstract unmapped reads from a bam file and convert to fastq files (PE reads)
wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
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