Hi, I'm Jan Eglinger, image data scientist and bio-image analyst at the Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland).
📫 Please contact me via the image.sc forum
Name: Jan Eglinger
Type: User
Company: Friedrich Miescher Institute for Biomedical Research (FMI)
Bio: Bio-Image Analyst / Image Data Scientist in the Facility for Advanced Imaging and Microscopy at FMI Basel
Twitter: jan_eglinger
Location: Basel, Switzerland
Hi, I'm Jan Eglinger, image data scientist and bio-image analyst at the Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland).
📫 Please contact me via the image.sc forum
Brain atlasing toolkit for ImageJ
ACSAuto script to semi-automatically evaluate ultrasound pictures
Custom toolbars and mini applications with ActionBar. Proceedings of the 2nd ImageJ User and Developer conference, Luxembourg, November 6-7th, 2008. http://dx.doi.org/10.5281/zenodo.35653
FIJI Plugin for quantification of cell migration, protrusions, and fluorescence intensities
A trial to convert AngioTool ( https://ccrod.cancer.gov/confluence/display/ROB2/Home ) into a Fiji plugin
Creating web applications with Jupyter and Binder
plugin for ImageJ to Encode/Decode 1D/2D Barcode
Beaker Extensions for Jupyter Notebook
ImgLib2-based viewer for registered SPIM stacks and more
Helpers to use BigDataViewer as a quick visualization tool in other projects.
ImgLib2/BDV implementation of Stitching for large datasets
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
Repo used by Bill Duncan to test ideas. Once ideas have been sufficiently developed, a new repo should be created.
GPU accelerated beam propagation tools for biological light tissue simulations
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
An introduction to bioimage analysis - http://bioimagebook.github.io
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
An ImageJ plugin to assist with blind analysis of image data.
Interactive Web Plotting for Python
BoneJ2 - the next gen version of BoneJ in development
Increase the number of people publishing educational, journalistic, and scientific materials that enable readers to read, edit, re-run and re-use that content. Using mybinder.org
a generalist algorithm for cellular segmentation
An open-source application for biological image analysis
Convex Hull BG for ImageJ
ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.