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astellas

Analysis pipeline, notebooks, and results for Astellas collaboration 2019-2021.

ca_source_extraction

Complete Matlab pipeline for large scale calcium imaging data analysis

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

com_cc

heatmaps

Grid of heatmaps with time-sensitive correlations

ideas-example-tool

Simple python functions for eventual encapsulation in IDEAS

ideas-public-python-utils

Core utils and functions for IDEAS open source containers

ideas-toolbox-public-template

inscopix-cnmfe

Algorithm for automated source extraction from 1P data

isx-cnmfe-wrapper

Code to call CNMFe through CaImAn or MATLAB

isx-video-labeler

Simple Python approach to manually labeling video frames to generate training data for supervised machine learning models.

isxsuite2p

cell detection in calcium imaging recordings

janus-webrtc-gateway-docker

Perfect Docker Image for Media Streaming Expert User ( https://github.com/meetecho/janus-gateway )

mpl_moviemaker

Wrapper for the Matplotlib Animation class that facilitates movie generation

pyisx

Experimentlal pure-python API to read Inscopix data