Comments (10)
This was indeed a very, quick temporal solution, since it wasn't a priority back then.
But I'll now try to fix this issue in the itkTransformixFilter file in elastix.
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The itk.elastix_registration_method
function is automatically generated from the itk::ElastixRegistrationMethod
class. Indexed input's and output's to that class become the position args
. The Set*
methods become the kwargs
(also supporting snake_case). For SimpleElastix, it was a different, involved manual process.
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How is the python itk.elastix_registration_method() defined (how does it know which functions to call in order)? Is this automatically done with swig or is it defined as a c++ method like in SimpleElastix?
In the swig case: What are the ruled for this automatic swig python wrapping?
And in the SimpleElastix case: In which file is it defined? (I haven't found it so far)
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And how are the internal function calls and the output of the function generated?
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@thewtex Where did you get this error? I can't reproduce it locally (windows and mac) nor on the CI
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@ViktorvdValk to reproduce the error, uncomment:
ITKElastix/wrapping/test/itkTransformixFilterTest.py
Lines 51 to 53 in 30d2e9d
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Yes, but that doesn't give me the error, not on the CI, nor on windows or mac. See https://github.com/InsightSoftwareConsortium/ITKElastix/compare/transformix_jacobian
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@ViktorvdValk interesting.. could a PR please be created to enable the test in CI, please?
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@N-Dekker has this been addressed with elastix 0.16.0?
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Related Issues (20)
- Latest ITKElastix crashes HOT 6
- How to minimise non-rigid distortion when using groupwise registration HOT 3
- pip install itk-elastix does not work HOT 3
- register these two dicom file HOT 1
- Extraction deformation field after 3D registration.
- Error loading initial transform and applying mask
- Error when multiprocessing coregistration HOT 1
- Groupwise registration of 4D objects and registration with mask
- Applying series of registrations to moving image label map HOT 4
- Reset random seed for deterministic registration HOT 7
- Data format differs from the example HOT 1
- Data format differs from the example HOT 1
- itk.ParameterObject -> seg fault in fresh env HOT 5
- Issue with image format HOT 1
- Elastix Model Zoo site cannot be opened HOT 1
- Inverse transform HOT 11
- ErodeMask and dilating mask
- GroupwiseRegistration notebook: ERROR: the direction cosines matrix of the fixed image is invalid! HOT 5
- Transform coordinates from moving images space to fixed images space HOT 1
- Error of multi-metric and multi-channel image registration HOT 1
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