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thewtex avatar thewtex commented on June 24, 2024

itk-anisotropicdiffusionlbr 1.0.2

itk-meshtopolydata 0.5.1

In a fresh virtualenv without these packages, does the error still occur?

python3 -m pip install --upgrade pip
python3 -m pip install --upgrade --pre itk-elastix itk

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olegl avatar olegl commented on June 24, 2024

I uninstalled anisotropicdiffusionlbr and meshtopolydata. Error persits. I upgraded pip and itk (but it was already at the most recent version). Error persists.

$ python3 -m pip install --upgrade --user pip
Requirement already up-to-date: pip in /home/lobacheo/.local/lib/python3.7/site-packages (20.0.2)
$ python3 -m pip install --upgrade --user --pre itk-elastix itk
Requirement already up-to-date: itk-elastix in /home/lobacheo/.local/lib/python3.7/site-packages (0.5.1)
Requirement already up-to-date: itk in /home/lobacheo/.local/lib/python3.7/site-packages (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: itk-filtering==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: itk-registration==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: itk-core==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: numpy in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (1.17.4)
Requirement already satisfied, skipping upgrade: itk-segmentation==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: itk-numerics==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
Requirement already satisfied, skipping upgrade: itk-io==5.1rc1.post1 in /home/lobacheo/.local/lib/python3.7/site-packages (from itk) (5.1rc1.post1)
$ python3 itkElastixRegistrationMethodTest.py input_0001.png input_0002.png  test.png
Traceback (most recent call last):
  File "itkElastixRegistrationMethodTest.py", line 61, in <module>
    registered, transform = itk.elastix_registration_method(fixed, moving)
  File "/home/lobacheo/.local/lib/python3.7/site-packages/itkLazy.py", line 52, in __getattribute__
    itkBase.LoadModule(module, namespace)
  File "/home/lobacheo/.local/lib/python3.7/site-packages/itkBase.py", line 82, in LoadModule
    LoadModule(dep, namespace)
  File "/home/lobacheo/.local/lib/python3.7/site-packages/itkBase.py", line 78, in LoadModule
    data = module_data[name]
KeyError: 'ITKSmoothing'
$ pip3 list | grep itk
itk                          5.1rc1.post1       
itk-core                     5.1rc1.post1       
itk-elastix                  0.5.1              
itk-elastix-opencl           0.5.1              
itk-filtering                5.1rc1.post1       
itk-io                       5.1rc1.post1       
itk-numerics                 5.1rc1.post1       
itk-registration             5.1rc1.post1       
itk-segmentation             5.1rc1.post1       
itkwidgets                   0.25.2

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olegl avatar olegl commented on June 24, 2024

A fresh virtualenv seems to bring me further. The current error is gone. Thank you!

I still get:

(test) $ python3 ../itkElastixRegistrationMethodTest.py ../input_0001.png ../input_0002.png  test.png
Traceback (most recent call last):
  File "../itkElastixRegistrationMethodTest.py", line 61, in <module>
    registered, transform = itk.elastix_registration_method(fixed, moving)
TypeError: cannot unpack non-iterable itkImageF2 object

I am investigating futher.

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olegl avatar olegl commented on June 24, 2024

Okay, it works.

One caveat, as expected from above: in https://github.com/InsightSoftwareConsortium/ITKElastix/blob/master/wrapping/test/itkElastixRegistrationMethodTest.py in else branch (line 60): we are not getting a transform back. So, there is no tuple. And also no transform defined for the later output.

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thewtex avatar thewtex commented on June 24, 2024

registered, transform = itk.elastix_registration_method(fixed, moving)

This is a difference in the API of master versus the released Python package.

Thank you for your patience.

This will be cleaned up with the ITK 5.1.0 release.

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