inti Goto Github PK

ase

Bayesian Analysis of Allelic Specific Expression

badges

Readme Badges – Gotta catch 'em all

chef_solo_numba

Chef_solo routine to install numba

chef_solo_pymc3

install pymc3 on a VM using chef_solo

cmap_gsa

This program allows to perform gene-set analyses with the results of the Connectivity Map project

comphy

This project develop a software for PhyloStratigraphy analyse and extends the original methodology in several ways, .e.g., into comparison across species.

consultora_acmeinnovation

eigen3

a (possibly out-of-date) clone of Eigen3

forge

This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details

ggplot

ggplot for python

gneiss

compositional data analysis and visualization toolbox

gwatools

gwatools

hugo_academic_site

int.github.io

inti

Config files for my GitHub profile.

inti.github.io

Personal website

ipython_d3_mashup

jakevdp.github.io

Pythonic Perambulations website

libplinkio

A Small C library for reading PLINK genotype files.

lldmv1

lnn

Local Nearest Neighbot Information Estimator

pybasicbayes

pyhsmm

pymattutil

a few miscellaneous functions I've found useful

python-data

Chef recipe to set up a data analysis-friendly Python virtual environment

shogun

The Shogun Machine Learning Toolbox (Source Code)

snakemake_rules

taxonomizer

uncertainty-toolbox

A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

vagrantboxes

Here are some vagrant boxes I use for my development. Be welcomed to change or improve in any way!