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Hi there! 👋

I am a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1832 commits        █████████░░░░░░░░░░░░░░░░   37.79 % 
🌆 Daytime                2106 commits        ███████████░░░░░░░░░░░░░░   43.44 % 
🌃 Evening                756 commits         ████░░░░░░░░░░░░░░░░░░░░░   15.59 % 
🌙 Night                  154 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   03.18 %

📅 I'm Most Productive on Wednesday

Monday                   864 commits         ████░░░░░░░░░░░░░░░░░░░░░   17.82 % 
Tuesday                  858 commits         ████░░░░░░░░░░░░░░░░░░░░░   17.70 % 
Wednesday                1480 commits        ████████░░░░░░░░░░░░░░░░░   30.53 % 
Thursday                 701 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.46 % 
Friday                   500 commits         ███░░░░░░░░░░░░░░░░░░░░░░   10.31 % 
Saturday                 38 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.78 % 
Sunday                   407 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   08.40 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
Python                   5 hrs 24 mins       ████████████████████░░░░░   78.96 % 
R                        1 hr 22 mins        █████░░░░░░░░░░░░░░░░░░░░   20.15 % 
Snakemake                3 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.73 % 
JSON                     0 secs              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.12 % 
Docker                   0 secs              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.03 % 

🐱‍💻 Projects: 
mosca_paper              3 hrs 19 mins       ████████████░░░░░░░░░░░░░   48.64 % 
MOSCA                    2 hrs 29 mins       █████████░░░░░░░░░░░░░░░░   36.42 % 
KEGGCharter              1 hr 1 min          ████░░░░░░░░░░░░░░░░░░░░░   14.94 %

I Mostly Code in Python

Python                   8 repos             █████████░░░░░░░░░░░░░░░░   34.78 % 
HTML                     7 repos             ████████░░░░░░░░░░░░░░░░░   30.43 % 
Jupyter Notebook         2 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   08.70 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   04.35 % 
CSS                      1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   04.35 %

Last Updated on 26/05/2024 18:44:26 UTC

João Sequeira's Projects

annotation_paper icon annotation_paper

UPIMAPI, reCOGnizer and KEGGCharter: bioinformatics tools for fast functional annotation and visualization of (meta)-omics datasets

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

cbeds icon cbeds

Chemical and Biological Engineering Doctoral SymposiUM

ipsgui icon ipsgui

The beta version of Merlin's plugin for handling of InterProScan

keggcharter icon keggcharter

A tool for representing genomic potential and transcriptomic expression into KEGG pathways

masterthesis icon masterthesis

Development of an automated pipeline for meta-omics data analysis

matamosca icon matamosca

Mosguito as an Application To easily Access MOSCA

mosca icon mosca

Meta-Omics Software for Community Analysis

mosguito icon mosguito

MOSca's GUI TO perform meta-omics analyses

recognizer icon recognizer

A tool for domain based annotation with databases from the Conserved Domains Database

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