Irene Robles Rebollo's Projects
Code used to generate paper figures.
Bioinformatics containers
Apply different dimensionality reduction techniques in a similar way to matrix data
Single cell models of inducible gene expression. Distribution simmulation out of transition matrix and gillespie simmulation. Gillespie simmulations. MCMC metropolis for parameter estimation.
julia code to do GSEA by using RCall
Config files for my GitHub profile.
An ImageJ macro that takes a folder with lif files and it makes 2D and 3D tiff stacks per channel in the parent directory. I use it to create input files for FishQuant and CellProfiler.
julia code to access MSigDb
Repository to host tool-specific module files for the Nextflow DSL2 community!
Test data to be used for automated testing with the nf-core pipelines
Solutions for common problems I find when I code.
Turn dataframes from Pandas to DataFrames and from DataFrames to Pandas
scRNAseq Workshop
A Julia package to deal with scRNAseq
Quantification of TSS using FISHQuant outlines