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ants-spatial

Mathematica code to generate results and figures in submitted article, "Spatial organization and interactions of harvester ants during foraging activity"

bb_imgacquisition

Recording software for FLEA3/XIMEA cameras using the NvEncoder, migrated from gitlab.

bb_imgstorage_nfs

Synchronization software for pushing video files to an NFS mount and reporting errors.

bb_irflash

Hard- and software for the 2016-style IR flash system of the beesbook project. Original code/hardware design done by hmoenck. Unfortunately, I don't have the original git history available (just a folder on the recording PC..)

bb_live

Live preview and statistics of beesbook colony

bb_raspicam

python code for automatic feeder and hive entrance cams. automatically detects bees and stores short videos to be decoded by bb_pipeline

bb_temploggers

Read and save temperature from ds18b20 temperature sensors with Arduino and python

bb_tracking

This repository holds the tracking code for the BeesBook project. It supersedes the tracking code used for 2016 and supports different types of bees.

bb_utils

Repository of utility scripts

bees_combbuilding

bees_drones_2019data

bees_heatstress_2019data

bees_lifetimetracking_2018data

bees_lifetimetracking_2019data

collectivedetection

dynamic-network-analysis-of-fish-schools

foraging-as-an-evidence-accumulation-process

Python codes to generate results and figures in publication "Foraging as an evidence accumulation process", PLoS Comp Bio, 2019

frameviewer

FrameViewer with database integration and some added interface changes

hein2015model-sim-deeplearning

Simulation code for the model from Hein 2015, and then codes for using tensorflow to fit parameters and simulation rules

perturbation-codes

ratsocialgroups

Code to reproduce the results in the paper "Social structure and individuals' behavior shaped by group composition in long-term tracking of rats"

schisto-pairsims

Simulations for the paper "Schistocephalus parasite infection alters individual movement and collective behaviour of three-spined sticklebacks"

summer2018-computationalmodelingcourse

swarmdeeplearn

wdd_bridge

zfish_mutants_analysis

Code used in the paper "Genetic control of collective behavior in zebrafish"