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experimentaltrodesmodule

A place for experimentation, free from judgment

geometrictransformation

Code accompanying the paper: Tang, W., Shin, J. D. & Jadhav, S. P. (2023). Geometric transformation of cognitive maps for generalization across hippocampal-prefrontal circuits. Cell Reports

geometrictransformationprotocol

jadhav-lab-codes-jhb

Code repositories from Jadhav Lab

jadhavlabwebpage

JadhavLabWebpage

mazecode

Repository of code used for various maze designs. The code is written in StateScript, which is compiled to control SpikeBox micro-controller.

ms4_pipeline

jlab mountainsort 4 pipeline to filter framework

mychronux

Manage edits to chronux

onix

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

prefrontalripples

reward

rsync-backup

python based rsync gui for rig computers

spikegadgets_openephys_drive

A tetrode hyper drive adapted from open ephys to work with spikegadgets

thetasequencesinrem

Hippocampal theta sequences in REM sleep during spatial learning

trodesdataprocess

A collection of bash (and some matlab) scripts to automatically carry out much of the data processing pipeline on nested folders containing Trodes data files. It basically crawls recursively through a folder structure and carries out Export functions (on multiple cores as background shell processes) and TrodesToMatlab on each processable datum.

usv_analysis

for analyzing USVs

vocalmat

Analysis of ultrasonic vocalizations from mice using computer vision and machine learning