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aav

Data Files for "Deep diversification of an AAV capsid protein by machine learning"

aav-screening

Code used in the screening for efficient AAV serotypes

aav-triple-transfection-mechanistic-model

Mechanistic model for AAV viral vector production via triple transfection. Published June 15th 2021

aav_fitness_landscape

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

aavgan

Generating capsids, yes....

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

bootcamp

Caltech Introduction to Programming for the Biological Science Bootcamp

cane

capacity-2019-

The King's College London 2019 iGEM team, Capacity, has created two software tools which serve as an informative resource for users to not only investigate the size limitations of current viral vectors but also equip them with a tool to investigate how capsid architecture may be manipulated to accommodate for a candidate therapeutic gene.

caplib

CAPLIB library for icosahedral symmetry

capsiddb

CapsidDB®: A Capsid proteins and their associated functional genes database.

deep_diversification_aav

Bioinformatics code for paper associated with deep diversification of AAV

deepromoter

Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the gene by controlling the binding of RNA polymerase)

dna-diffusion

Understanding the code of life: Generative models of regulatory DNA sequences based on diffusion models.

flexs

Fitness landscape exploration sandbox for biological sequence design.

generative_aav_design

Code and Data for Generative modeling for AAV design

ghost

A new one shot face swap approach for image and video domains

google-research

Google Research

mcreate

meta-pseudo-label

ml-genomics-resources

Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)

mrl

Molecular Reinforcement Learning

opentokrtc

WebRTC Demo using OpenTok's WebRTC library for video and OpenTok signaling for live chat

python-notebooks-repo

A repo for shared Jupyter and Colab notebooks

self_assembly

Brute-force simulations of capsid assembly

tts-kor

[KAIST CS420] Transfer Learning from Speaker Verification to Zero-Shot Multispeaker Korean Text-To-Speech Synthesis

vcsa

viral capsid self assembly - optimization

xpresso

Predicting gene expression levels from genomic sequences