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awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

awesome-nextflow

A curated list of nextflow based pipelines

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

aws-igenomes

Documentation and description of AWS iGenomes S3 resource.

bioinformatics-with-python-cookbook-third-edition

Bioinformatics with Python Cookbook, Third Edition

book

cloudconductor

CloudConductor is a workflow management system that generates and executes bioinformatics pipelines

common_variant_filter

A simple filter to annotate and filter somatic or germline variants based on their observed allele counts in ExAC

community_software_tools_for_ngs

csbb-shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

degust

An interactive web-tool for RNA-seq analysis

dge_workshop_salmon

gvanno

Generic germline variant annotation pipeline

installing-r-with-anaconda

Biological researchers, bioinformatics professionals, and biostatisticians should install R via Anaconda to gain access to the Bioconda package channel to enable easy dependency management and reproduce-ability.

ngs_scripts

reference_data

Reference data: BED files, genes, transcripts, variations.

rf-mut-f

A random forest implementation to filter germline mutations of tumor-only samples

rmrwr-book

Reproducible Medical Research with R

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

suppa

SUPPA2: Fast quantification of differential splicing

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vep_pipeline

Pipeline for variant annotation using Variant Effect Predictor (VEP)