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jaisonjseq's Projects

admixr icon admixr

An R package for reproducible and automated ADMIXTOOLS analyses

beast2 icon beast2

Bayesian Evolutionary Analysis by Sampling Trees

cmirclustfinder_v1.0 icon cmirclustfinder_v1.0

CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.

fsc_shiny icon fsc_shiny

Shiny application to facilitate the interpretation of fastsimcoal results.

haplogrep-cmd icon haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

hapne icon hapne

Haplotype-based inference of recent effective population size in modern and ancient DNA samples

muscle icon muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

quast icon quast

Genome assembly evaluation tool

samtools icon samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

y-lineagetracker icon y-lineagetracker

A high-throughput analysis framework for Y-chromosomal next-generation sequencing data

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