james-guevara Goto Github PK

annotationdatabase

annotation database for human genetics, genomics and epigenomics

bionim

A collection of useful algorithms and data structures for bioinformatics

blog

Build a Jekyll blog in minutes, without touching the command line.

delly_for_s3

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

gensv

A tool for genotyping structural variations from third generation sequencing data (ONT/PacBio)

hytrack

Tracking neurons in hydra vulgaris

james-guevara.github.io

leetcode_exercises

long_read_sv_pipeline

ONT and PacBio data

long_read_svs

a description of the GoLong pipeline for SV calling from long-read sequencing data (ONT/PacBio)

moco

motion correction

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

pybpl

Bayesian Program Learning toolkit in Python

pydnm

Python clone of ForestDNM

quartz

🌱 host your own second brain and digital garden for free

restaurant_chooser

sceneparsing

Crude image segmentation model based on deep learning

scripts

Various scripts

sfari_nf_pipeline

Annotating SFARI VCFs, making PLINK genotype files

short_read_sv_pipeline

skills-github-pages

My clone repository

sv2

Support Vector Structural Variation Genotyper

sv2_2

Support Vector Structural Variation Genotyper

synthdnm

This tool allows for training de novo classifiers via creating "synthetic de novos" from private, inherited variants.

synthdnm_python

tiff_parser

For parsing, maybe ouputting tiff parsers