jamescasbon Goto Github PK

base16-builder

Base16 Builder

bcbb

bcbb related files

biopython

Official git mirror of the Biopython CVS repository

bottle-extras

The Bottle Plugin Collection (beta)

coach

Reinforcement Learning Coach by Intel AI Lab enables easy experimentation with state of the art Reinforcement Learning algorithms

codenode

Interactive Programming Notebook for the Web Browser

codenode-ng

Rewrite of codenode with backbone/mongo

comma-separated-json

CSV but without the suck

contracts

An implementation of contracts for Python.

cssr

CSSR from http://masi.cscs.lsa.umich.edu/~crshalizi/CSSR/

cutadapt

cutadapt removes adapter sequences from DNA sequencing reads

django-ensembl

Django models for ensembl

fastinterval

Simple interval class for fast fasta access

femhub-online-lab

FEMhub Online Lab

flask-backbone-mongo

experiments with backbone.js, flask and mongo

genometools

GenomeTools genome analysis system.

honcho

Honcho: a python clone of Foreman. For managing Procfile-based applications

httplib2

Small, fast HTTP client library for Python. Features persistent connections, cache, and Google App Engine support. Originally written by Joe Gregorio, now supported by community.

icontract

Design-by-contract in Python3 with informative violation messages and inheritance

jamescasbon.github.io

jbrowse

AJAX Genome Browser

lettuce

Cucumber-ish BDD for python

mongoengine

A Python Object-Document-Mapper for working with MongoDB

notebook.js

Programming notebooks

org-mode-workshop

Workshop for Org-mode with focus on todo-, project- and workflow-management

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

phabricator

Open software engineering platform and fun adventure game

prezto

The community-driven framework for configuring Zsh.

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files