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3dmol.js

WebGL accelerated JavaScript molecular graphics library

arachnid

Image analysis software for cryo-electron microscopy

biopython

Official git repository for Biopython (originally converted from CVS)

biosimspace

Code and resources for the EPSRC BioSimSpace project.

comd

covid

MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store

drugui

Druggability Suite

dssp

The DSSP building software

emtable

Simple module to deal with EM tabular data (aka metadata)

enhanced-sampling-workshop-2022

ensemble-reweighting-using-cryo-em-particles

feedstocks

All conda-forge feedstocks, in one convenient place

glew

The OpenGL Extension Wrangler Library

imp

The Integrative Modeling Platform

inertia_tensors

a Python module for calculating inertia tensors for collections of n-dimensional points

jwalk

A tool to calculate the solvent accessible surface distance (SASD) between crosslinked residues.

learn_cryoem_math

maltesers

A set of python scripts for carrying out the dimer interface analysis originally done in Sukumaran et al., EMBO J 2011

matplotlib

matplotlib: plotting with Python

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

mdtraj

An open library for the analysis of molecular dynamics trajectories

mmtf-cpp

The pure C++ implementation of the MMTF API, decoder and encoder.

mnxl

Validating models using restraints from crosslinking mass spectrometry

molecool

A Python package for analyzing and visualizing molecular structures. For MSF bootcamp.

mrcfile

A Python implementation of the MRC2014 file format

nmwiz

Normal Mode Wizard

nmwiz-chimera

nmwizconverter

Takes in a pdb file and vibrational mode data from CHARMM and returns a nmd file for use with NormalModeWizard in VMD

numpy

The fundamental package for scientific computing with Python.

nvm

Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions